Commits · 8558fda7213461506b69ed871d8294710719b712 · Martin Larralde / PyFastANI · GitLab

Snippets Groups Projects

Jul 23, 2022
- Fix Arm NEON compile flags in `setup.py` · 8558fda7
  Martin Larralde authored 2 years ago
  
  8558fda7
Jul 17, 2022
- Fix `package.yml` workflow not updating `setuptools` before testing wheels · fae4a843
  Martin Larralde authored 2 years ago
  
  fae4a843
- Fix `BOOST_IF_CONSTEXPR` macro not being defined in Linux builds · 98382fc2
  Martin Larralde authored 2 years ago
  
  98382fc2
- Add path to `Boost::math` headers when compiling `pyfastani._fastani` · 34c07e53
  Martin Larralde authored 2 years ago
  
  34c07e53
Jul 16, 2022
- Patch compilation steps in `setup.py` to avoid building universal wheels on OSX · 333f75d2
  Martin Larralde authored 2 years ago
  
  333f75d2
Mar 23, 2022
- Disable Boost exception handling in `setup.py` · 4a588d8d
  Martin Larralde authored 3 years ago
  
  4a588d8d
Nov 15, 2021
- Add support for using `Sketch` and `Mapper` with protein sequences · 82084d21
  Martin Larralde authored 3 years ago
  
  82084d21
Jun 19, 2021
- Fix missing defines in compilation of `cpu_features` library · 33cd43de
  Martin Larralde authored 3 years ago
  
  33cd43de
- Use Google's `cpu_features` for cross-platform runtime detection of CPU features · 838add64
  Martin Larralde authored 3 years ago
  
  838add64
- Rewrite `build_clib` command in `setup.py` to attempt compiling platform-specific code · fde8a9b8
  Martin Larralde authored 3 years ago
  
  fde8a9b8
- Add a minimal SIMD-accelerated FASTA parser for tests and CLI · 41cfdf1b
  Martin Larralde authored 3 years ago
  
  41cfdf1b
Jun 17, 2021
- Use smaller structs to emulate a `kseq_t` and improve on indexing of query fragments · 2347d978
  Martin Larralde authored 3 years ago
  
  2347d978
Jun 16, 2021
- Rewrite `Sketch._add_draft` to allow reading directly from Unicode sequences · 62a18dba
  Martin Larralde authored 3 years ago
  
  62a18dba
Jun 13, 2021
- Fix compilation error with `clang` on some older OSX versions · 49e21e2a
  Martin Larralde authored 3 years ago
  
  49e21e2a
- Compile and link against `boost::math` instead of the GSL to avoid licensing issues · b2b91b84
  Martin Larralde authored 3 years ago
  
  b2b91b84
- Add necessary stubs to `_utils.cpp` to avoid linking to `zlib` · 646c3227
  Martin Larralde authored 3 years ago
  
  646c3227
Jun 12, 2021
- Patch some FastANI constructors to prevent them from running additional methods · e54f5ccc
  Martin Larralde authored 3 years ago
  
  e54f5ccc
- Expose additional private fields of `skch::Sketch` in Cython headers · bd587ede
  Martin Larralde authored 3 years ago
  
  bd587ede
- Add a custom build command to make everything public in C++ headers · bc8967c2
  Martin Larralde authored 3 years ago
  
  bc8967c2
- Add setuptools configuration files with Cython support · f3733712
  Martin Larralde authored 3 years ago
  
  f3733712