Commits · 4202df6b5e62eff6c4f51a9c13e728209e70ff05 · Kimberly Isobel Meechan / platy-browser-data

Jun 20, 2019
- Add cell region script and table · 4202df6b
  Constantin Pape authored 5 years ago
  
  4202df6b
- Add (binary) muscle segmentation and tissue segmentation · c96105a9
  Constantin Pape authored 5 years ago
  
  c96105a9
Jun 13, 2019
- Skip invalid labels in morphology computation instead of placeholder features · 408c9dad
  Constantin Pape authored 5 years ago
  
  408c9dad
- Recompute tables to fix issues in morphology computation · dd94a972
  Constantin Pape authored 5 years ago
  
  dd94a972
- Merge branch 'morphp' into 'dev' · eba5ba63
  Constantin Pape authored 5 years ago
  
  Wrap morphology calculation in cluster task; parallelize it See merge request tischer/platy-browser-tables!1
  eba5ba63
- Wrap morphology calculation in cluster task; parallelize it · 224f2ea2
  Constantin Pape authored 5 years ago
  
  224f2ea2
Jun 12, 2019
- Wrap gene expression in cluster task; vectorize and parallelize computation · 2aa06f51
  Constantin Pape authored 5 years ago
  
  2aa06f51
- Simplify cell property calculation for gene attributes · 7ddc3228
  Constantin Pape authored 5 years ago
  
  7ddc3228
Jun 11, 2019
- Add morphology tables · 66c67a78
  Constantin Pape authored 5 years ago
  
  66c67a78
- Add test for morphology attributes · eddbc834
  Constantin Pape authored 5 years ago
  
  eddbc834
- Refactor morphology functions and simplify bounding box calculation · fe2a9c01
  Constantin Pape authored 5 years ago
  
  fe2a9c01
- Correct default tables · 77239a84
  Constantin Pape authored 5 years ago
  
  77239a84
- Fix bug in base attributes · 560d3cea
  Constantin Pape authored 5 years ago
  
  560d3cea
- Add test for base attributes · 5e111e30
  Constantin Pape authored 5 years ago
  
  5e111e30
- Implement test for genes table · c6e2d7fc
  Constantin Pape authored 5 years ago
  
  c6e2d7fc
- PEP8 · 3682f1fe
  Constantin Pape authored 5 years ago
  
  3682f1fe
- Add morphology script · fd712ab5
  Kimberly Isobel Meechan authored 5 years ago
  
  fd712ab5
Jun 07, 2019
- Add test mock-up · 9cdff50e
  Constantin Pape authored 5 years ago
  
  9cdff50e
- Add generated data · 6bb1a5d2
  Constantin Pape authored 5 years ago
  
  6bb1a5d2
- Add xml functionality · a79091e1
  Constantin Pape authored 5 years ago
  
  a79091e1
- Update gene script and call it for cell master table · 693f7a25
  Constantin Pape authored 5 years ago
  
  693f7a25
- PEP8 · c08565cb
  Constantin Pape authored 5 years ago
  
  c08565cb
- cleaned up · 2199c143
  Valentyna Zinchenko authored 5 years ago
  
  2199c143
- script to write gene table · b75430bc
  Valentyna Zinchenko authored 5 years ago
  
  b75430bc
Jun 05, 2019
- Add script for object mapping tables · 80c1e89b
  Constantin Pape authored 5 years ago
  
  80c1e89b
- Update README.md · 2d559a1f
  Constantin Pape authored 5 years ago
  
  2d559a1f
- Update README.md · cabb25a2
  Constantin Pape authored 5 years ago
  
  cabb25a2
- Add initial version of generated data · 14765091
  Constantin Pape authored 5 years ago
  
  14765091
- Implement default table generation · b888ac80
  Constantin Pape authored 5 years ago
  
  b888ac80
Jun 04, 2019
- Implement segmentation export · 81737ef2
  Constantin Pape authored 5 years ago
  
  81737ef2
- Remove non-auto generated tables · c6c759e8
  Constantin Pape authored 5 years ago
  
  c6c759e8
- Continue implementation for initial data version · 1f8a9249
  Constantin Pape authored 5 years ago
  
  1f8a9249
- Add skeleton script for making initial version · 5a93369a
  Constantin Pape authored 5 years ago
  
  5a93369a
- Work on skeleton implementation for update_platy_browser · c44a8fea
  Constantin Pape authored 5 years ago
  
  c44a8fea
Jun 03, 2019
- Add conda env file · dcb8d23d
  Constantin Pape authored 5 years ago
  
  dcb8d23d
- Make structure for segmentation scripts · 18a4b9a1
  Constantin Pape authored 5 years ago
  
  18a4b9a1
- Add conda env file · 6263a6d2
  Constantin Pape authored 5 years ago
  
  6263a6d2
- Implement scripts for base attributes and bdv export · 52f990e6
  Constantin Pape authored 5 years ago
  
  52f990e6
- Rename tables · 22e58743
  Constantin Pape authored 5 years ago
  
  22e58743
May 08, 2019
- Rename table to stay consistent with segmentation · 7008b6d6
  Constantin Pape authored 5 years ago
  
  7008b6d6