Fix shape in xmls

data/test_n5/0.6.5/images/s3-n5/sbem-6dpf-1-whole-raw.xml

@@ -11,7 +11,7 @@
       <ViewSetup>
         <id>0</id>
         <name>channel 1</name>
-        <size>430 405 357</size>
+        <size>3438 3240 2854</size>
         <voxelSize>
           <unit>micrometer</unit>
           <size>0.08 0.08 0.1</size>

data/test_n5/0.6.5/segmentations/s3-n5/sbem-6dpf-1-whole-segmented-cells-labels.xml

@@ -11,7 +11,7 @@
       <ViewSetup>
         <id>0</id>
         <name>channel 1</name>
-        <size>860 810 714</size>
+        <size>3438 3240 2854</size>
         <voxelSize>
           <unit>micrometer</unit>
           <size>0.08 0.08 0.1</size>

scripts/files/for_upload.py

@@ -165,7 +165,7 @@ def copy_images(in_folder, out_folder, data_out_folder,
 
         # copy from hdf5 to n5
         copy_file_to_bdv_n5(in_h5, out_file, resolution, chunks, start_scale)
-        key = get_key(False, 0, 0, start_scale)
+        key = get_key(False, 0, 0, 0)
         with open_file(out_file, 'r') as f:
             shape = f[key].shape
 
@@ -216,7 +216,7 @@ def copy_segmentations(in_folder, out_folder, segmentations_to_copy, output_root
 
         # copy from hdf5 to n5
         copy_file_to_bdv_n5(in_h5, out_file, resolution, chunks, start_scale)
-        key = get_key(False, 0, 0, start_scale)
+        key = get_key(False, 0, 0, 0)
         with open_file(out_file, 'r') as f:
             shape = f[key].shape