Commits · 3f682f72fe347854aeaeb54f89cfd88d2100853b · Christian Tischer / platy-browser-data

Feb 05, 2020
- Add script for chunk estimates · 3f682f72
  Constantin Pape authored 5 years ago
  
  3f682f72
Feb 03, 2020
- Fix calculation of scale factors for bdv-n5 · bd8df759
  Constantin Pape authored 5 years ago
  
  bd8df759
Feb 02, 2020
- Fix shape in xmls · a0402789
  Constantin Pape authored 5 years ago
  
  a0402789
- Fix embl s3 endpoint · af8255a7
  Constantin Pape authored 5 years ago
  
  af8255a7
Jan 31, 2020
- Add test folder for cloud · ce4192cb
  Constantin Pape authored 5 years ago
  
  ce4192cb
- Add initial bookmark facility · 84798299
  Constantin Pape authored 5 years ago
  
  84798299
- Start to implement prototype for n5 s3 folder · 65e0301a
  Constantin Pape authored 5 years ago
  
  65e0301a
Jan 30, 2020
- update comments · 8e478a6a
  Kimberly Isobel Meechan authored 5 years ago
  
  8e478a6a
Jan 29, 2020
- add back numpy thread setting · 62bb40fb
  Kimberly Isobel Meechan authored 5 years ago
  
  62bb40fb
Jan 28, 2020
- fixed calls to column generation function · f40e7e23
  Kimberly Isobel Meechan authored 5 years ago
  
  f40e7e23
- removed radial intensity for cells where nucleus area is excluded · 907c84c3
  Kimberly Isobel Meechan authored 5 years ago
  
  907c84c3
- neatened up & did docstrings · 0a4044e7
  Kimberly Isobel Meechan authored 5 years ago
  
  0a4044e7
- fixed bug with excluding the nucleus area, swapped all resize to use vigra · b8118ec1
  Kimberly Isobel Meechan authored 5 years ago
  
  b8118ec1
- separated filters into own function · c84be4c0
  Kimberly Isobel Meechan authored 5 years ago
  
  c84be4c0
- moved column generation into separate function, merged... · aad7c22f
  Kimberly Isobel Meechan authored 5 years ago
  
  moved column generation into separate function, merged compute_morphology_features function into main function
  aad7c22f
- split main function into two · 181976df
  Kimberly Isobel Meechan authored 5 years ago
  
  181976df
Jan 24, 2020
- neatened script · 8c06a726
  Kimberly Isobel Meechan authored 5 years ago
  
  8c06a726
Jan 21, 2020
- Add midgut column to region table · f19af3e3
  Constantin Pape authored 5 years ago
  
  f19af3e3
Nov 25, 2019
- Add initial ganglia segmentation to version 0.6.5 · 43ac1b6e
  Constantin Pape authored 5 years ago
  
  43ac1b6e
Nov 14, 2019
- Update the cilia cell mapping tables · e82109d0
  Constantin Pape authored 5 years ago
  
  e82109d0
- Squash the soft-links in latest nuclei table folder · 4d0f91fe
  Constantin Pape authored 5 years ago
  
  4d0f91fe
Nov 11, 2019
- Update segmentation export · 0d8bdb26
  Constantin Pape authored 5 years ago
  
  0d8bdb26
Nov 08, 2019
- Finish (initial) implementation of segmentation correction and validation. · 0e93379d
  Constantin Pape authored 5 years ago
  
  0e93379d
Nov 07, 2019
- Add functionality to autogenerate additional table file and add it to 0.6.3 · 85d2a86d
  Constantin Pape authored 5 years ago
  
  85d2a86d
- Update prospr registration · fee6be44
  Constantin Pape authored 5 years ago
  
  0.6.3
  
  fee6be44
- Update patch version · b8ad90b5
  Constantin Pape authored 5 years ago
  
  0.6.2
  
  b8ad90b5
Nov 06, 2019
- Update patch version · fbcdee83
  Constantin Pape authored 5 years ago
  
  0.6.1
  
  fbcdee83
Nov 04, 2019
- Fix issues with segmentation attributes derived from virtual cells · b60a3891
  Constantin Pape authored 5 years ago
  
  b60a3891
Oct 28, 2019
- Update segmentation export · 305c6d65
  Constantin Pape authored 5 years ago
  
  305c6d65
Oct 17, 2019
- Update cell seg evaluation · 54026e2f
  Constantin Pape authored 5 years ago
  
  54026e2f
- Update validation code · ba81ccf9
  Constantin Pape authored 5 years ago
  
  ba81ccf9
- Add check for validation data · d5656cde
  Constantin Pape authored 5 years ago
  
  d5656cde
Oct 16, 2019
- Start to implement segmentation correction · 22c09c9b
  Constantin Pape authored 5 years ago
  
  22c09c9b
- Start to implement validation code · 062cc38d
  Constantin Pape authored 5 years ago
  
  062cc38d
Oct 04, 2019
- Add scripts for masking extrapolated cells and nuclei · 38f96f46
  Constantin Pape authored 5 years ago
  
  38f96f46
- Fix issues in vc assignment scripts · 12bd0d59
  Constantin Pape authored 5 years ago
  
  12bd0d59
- Add vc assignment implementation and update gene overlap assignment scripts · 0d49ef32
  Constantin Pape authored 5 years ago
  
  0d49ef32
Oct 03, 2019
- Register virtual-cells with prospr · a6765622
  Constantin Pape authored 5 years ago
  
  a6765622
- Fix issues in region attributes · 1aaf8ebb
  Constantin Pape authored 5 years ago
  
  1aaf8ebb
Oct 02, 2019
- Update scripts for intensity correction and downscaling · 38117e7e
  Constantin Pape authored 5 years ago
  
  38117e7e