Commits · 62bb40fb02a31bc04b213464500ae901299d2f7d · Christian Tischer / platy-browser-data · GitLab

Snippets Groups Projects

Jan 29, 2020
- add back numpy thread setting · 62bb40fb
  Kimberly Isobel Meechan authored 5 years ago
  
  62bb40fb
Jan 28, 2020
- fixed calls to column generation function · f40e7e23
  Kimberly Isobel Meechan authored 5 years ago
  
  f40e7e23
- removed radial intensity for cells where nucleus area is excluded · 907c84c3
  Kimberly Isobel Meechan authored 5 years ago
  
  907c84c3
- neatened up & did docstrings · 0a4044e7
  Kimberly Isobel Meechan authored 5 years ago
  
  0a4044e7
- fixed bug with excluding the nucleus area, swapped all resize to use vigra · b8118ec1
  Kimberly Isobel Meechan authored 5 years ago
  
  b8118ec1
- separated filters into own function · c84be4c0
  Kimberly Isobel Meechan authored 5 years ago
  
  c84be4c0
- moved column generation into separate function, merged... · aad7c22f
  Kimberly Isobel Meechan authored 5 years ago
  
  moved column generation into separate function, merged compute_morphology_features function into main function
  aad7c22f
- split main function into two · 181976df
  Kimberly Isobel Meechan authored 5 years ago
  
  181976df
Jan 24, 2020
- neatened script · 8c06a726
  Kimberly Isobel Meechan authored 5 years ago
  
  8c06a726
Jul 17, 2019
- More cell features added - rough · 8c04dd44
  Kimberly Isobel Meechan authored 5 years ago
  
  8c04dd44
Jul 16, 2019
- Added further intensity features, texture features and chromatin features · 8c34447f
  Kimberly Isobel Meechan authored 5 years ago
  
  8c34447f
Jul 15, 2019
- add texture features · 9eb2c4c3
  Kimberly Isobel Meechan authored 5 years ago
  
  9eb2c4c3
- added more morphology row features · b4e83b75
  Kimberly Isobel Meechan authored 5 years ago
  
  b4e83b75
- Changed to shape_pixelsize, no n_pixels in table · ca709159
  Kimberly Isobel Meechan authored 5 years ago
  
  ca709159
- ignore .idea files · 46268e2c
  Kimberly Isobel Meechan authored 5 years ago
  
  46268e2c
Jul 14, 2019
- Fix chromatin default table name · b0d38851
  Constantin Pape authored 5 years ago
  
  b0d38851
- Fix some issues in morphology refactor and tests · 81e9a4c9
  Constantin Pape authored 5 years ago
  
  81e9a4c9
- Refactor morphology feature implementation in separate file · 7fe3e58d
  Constantin Pape authored 5 years ago
  
  7fe3e58d
Jul 11, 2019
- Fix issues in segmentation id mapping · 122d78b0
  Constantin Pape authored 5 years ago
  
  122d78b0
- Automatic platy-browser update · 3606db21
  Constantin Pape authored 5 years ago
  
  0.2.1
  
  3606db21
Jul 10, 2019
- Working version of subvolume extraction · 7fe70128
  Constantin Pape authored 5 years ago
  
  7fe70128
- Add chromatin data · 3bbef304
  Constantin Pape authored 5 years ago
  
  0.2.0
  
  3bbef304
- Add chromatin segmentation to data · 4bc50d05
  Constantin Pape authored 5 years ago
  
  4bc50d05
Jul 09, 2019
- Start to implement subvolume extraction WIP · 28f13eb2
  Constantin Pape authored 5 years ago
  
  28f13eb2
- Update nucleus mapping test · ac241ce3
  Constantin Pape authored 5 years ago
  
  ac241ce3
- Add cell count script · 1ab5d8d1
  Constantin Pape authored 5 years ago
  
  1ab5d8d1
- Switch nucleus table in latest release · ee1bc067
  Constantin Pape authored 5 years ago
  
  ee1bc067
- Update nucleus mapping script · e0c42e4e
  Constantin Pape authored 5 years ago
  
  e0c42e4e
- Update region attribute tests · f2356faa
  Constantin Pape authored 5 years ago
  
  f2356faa
Jul 08, 2019
- Fix region table in latest release · 77f6442f
  Constantin Pape authored 5 years ago
  
  77f6442f
- Add script for legacy platy-browser export · 31618e5c
  Constantin Pape authored 5 years ago
  
  31618e5c
- Update prospr segmented regions · a082f5b6
  Constantin Pape authored 5 years ago
  
  a082f5b6
- Automatic platy browser update · b336445d
  Constantin Pape authored 5 years ago
  
  0.1.1
  
  b336445d
Jul 07, 2019
- Add cilia segmentation data · b92f1e23
  Constantin Pape authored 5 years ago
  
  0.1.0
  
  b92f1e23
- Copy segment id lut when copying segmentation xml · d9a5b411
  Constantin Pape authored 5 years ago
  
  d9a5b411
Jul 06, 2019
- Add export scripts for cilia segmentation · f634feca
  Constantin Pape authored 5 years ago
  
  f634feca
- Automatic platy browser update · 9ca8db04
  Constantin Pape authored 5 years ago
  
  0.0.1
  
  9ca8db04
- Add scripts to copy tables · 72dfb368
  Constantin Pape authored 5 years ago
  
  72dfb368
Jun 30, 2019
- Implement anchor correction · 1c8e755e
  Constantin Pape authored 5 years ago
  
  1c8e755e
- Fix several issues in update_platy_browser · 886241a6
  Constantin Pape authored 5 years ago
  
  886241a6