Commits · 9ae7a62d42939a80463b41a0eb7cc5e7c1e0185d · Christian Tischer / platy-browser-data · GitLab

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Sep 25, 2019
- Add gene volume and table update to update_registration script · 0a7d67c3
  Constantin Pape authored 5 years ago
  
  0a7d67c3
Sep 24, 2019
- Update registration scripts · 60bcd005
  Constantin Pape authored 5 years ago
  
  60bcd005
Sep 23, 2019
- Update default conda env · e80707f1
  Constantin Pape authored 5 years ago
  
  e80707f1
- Update apply_registration · e8bec9d1
  Constantin Pape authored 5 years ago
  
  e8bec9d1
Sep 20, 2019
- Update muscle segmentation scripts · 55a9a5f0
  Constantin Pape authored 5 years ago
  
  55a9a5f0
- Debugging apply_registration WIP · 0af98c8a
  Constantin Pape authored 5 years ago
  
  0af98c8a
- Use proper scale factors in export_segmentation · 66bdc9bb
  Constantin Pape authored 5 years ago
  
  66bdc9bb
- Implement simple table propagation and update cilia attributes · a49fb421
  Constantin Pape authored 5 years ago
  
  a49fb421
- Update registration wrapper · 38cfadd7
  Constantin Pape authored 5 years ago
  
  38cfadd7
Sep 18, 2019
- Use string for transformix command · 894c5930
  Constantin Pape authored 5 years ago
  
  894c5930
- Fix some issues in registration wrapper and add script to check it · 7fd8291d
  Constantin Pape authored 5 years ago
  
  7fd8291d
Sep 16, 2019
- Add python scripts to run registration on the cluster · dd0aa99e
  Constantin Pape authored 5 years ago
  
  dd0aa99e
Sep 11, 2019
- Add scripts for initial nephridia analysis · 5087199e
  Constantin Pape authored 5 years ago
  
  5087199e
Sep 10, 2019
- Add new patch version · 9851a993
  Constantin Pape authored 5 years ago
  
  0.5.2
  
  9851a993
Sep 05, 2019
- Fix issue in trace table extraction · 5fb5ed96
  Constantin Pape authored 5 years ago
  
  5fb5ed96
- Update neuron trace extraction · 7ef3a57b
  Constantin Pape authored 5 years ago
  
  7ef3a57b
Sep 04, 2019
- Finish implementation of cilia len and diameter · 6ce78eb5
  Constantin Pape authored 5 years ago
  
  6ce78eb5
- Update cilia attributes WIP · e4dbeb4d
  Constantin Pape authored 5 years ago
  
  e4dbeb4d
Sep 03, 2019
- Check cilia len computation · 1c89101f
  Constantin Pape authored 5 years ago
  
  1c89101f
- First working version of cilia atttributes (not tested for correctness) · 41650aa7
  Constantin Pape authored 5 years ago
  
  41650aa7
Sep 02, 2019
- Implement cilia features WIP · 3071b175
  Constantin Pape authored 5 years ago
  
  3071b175
- Start to implment muscle correction · 589775d8
  Constantin Pape authored 5 years ago
  
  589775d8
Aug 30, 2019
- Add option to rename images; implement table computation for cellular models · 926bf834
  Constantin Pape authored 5 years ago
  
  926bf834
- Update cilia segmentation scripts · c6331538
  Constantin Pape authored 5 years ago
  
  0.5.1
  
  c6331538
- Update patch version · 18e01d15
  Constantin Pape authored 5 years ago
  
  18e01d15
Aug 27, 2019
- Implement tables from manual ID mapping WIP · 9895ec7b
  Constantin Pape authored 5 years ago
  
  9895ec7b
- Add volume measurements · f6e2e3ce
  Constantin Pape authored 5 years ago
  
  f6e2e3ce
Aug 26, 2019
- Update neuron trace extraction · 27cf4bff
  Constantin Pape authored 5 years ago
  
  27cf4bff
- Implement neuron trace extraction · c4ff87ad
  Constantin Pape authored 5 years ago
  
  c4ff87ad
- Add cell segmentation scripts · dbcfd28d
  Constantin Pape authored 5 years ago
  
  dbcfd28d
Aug 23, 2019
- Add gene expression computation · a6f91df4
  Constantin Pape authored 5 years ago
  
  a6f91df4
- Fix bdv-server configs; add test folder for bdv-server · 5ecd38c3
  Constantin Pape authored 5 years ago
  
  5ecd38c3
Aug 21, 2019
- Add version.json · 1bf7fa48
  Constantin Pape authored 5 years ago
  
  1bf7fa48
Aug 20, 2019
- Fix some issues in table generation and copying · 4592575c
  Constantin Pape authored 5 years ago
  
  4592575c
Aug 16, 2019
- Fix some path issues and error handling in bdv script · 441de54d
  Constantin Pape authored 5 years ago
  
  441de54d
- Udpate README; fix minor issues · 306dc8f3
  Constantin Pape authored 5 years ago
  
  306dc8f3
- Make bdv server files for major and minor releases; add post-processing options (not tested) · 2378ceb9
  Constantin Pape authored 5 years ago
  
  2378ceb9
- Fix minor issues; update README.md and environment.yaml · 428414fa
  Constantin Pape authored 5 years ago
  
  428414fa
- Fix some issues; make new release · 6f5cc970
  Constantin Pape authored 5 years ago
  
  0.3.0
  
  6f5cc970
- Implement update_major and update_minor (not tested) · 9a715fbe
  Constantin Pape authored 5 years ago
  
  9a715fbe