Commits · e4dbeb4d5767ccbea4958052e120d37499e67336 · Christian Tischer / platy-browser-data · GitLab

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Sep 04, 2019
- Update cilia attributes WIP · e4dbeb4d
  Constantin Pape authored 5 years ago
  
  e4dbeb4d
Sep 03, 2019
- Check cilia len computation · 1c89101f
  Constantin Pape authored 5 years ago
  
  1c89101f
- First working version of cilia atttributes (not tested for correctness) · 41650aa7
  Constantin Pape authored 5 years ago
  
  41650aa7
Sep 02, 2019
- Implement cilia features WIP · 3071b175
  Constantin Pape authored 5 years ago
  
  3071b175
Aug 30, 2019
- Update cilia segmentation scripts · c6331538
  Constantin Pape authored 5 years ago
  
  0.5.1
  
  c6331538
- Update patch version · 18e01d15
  Constantin Pape authored 5 years ago
  
  18e01d15
Aug 27, 2019
- Implement tables from manual ID mapping WIP · 9895ec7b
  Constantin Pape authored 5 years ago
  
  9895ec7b
Aug 20, 2019
- Fix some issues in table generation and copying · 4592575c
  Constantin Pape authored 5 years ago
  
  4592575c
Aug 15, 2019
- add_segmentation is working for static segmentation and added existing static segmentations · e62eb491
  Constantin Pape authored 5 years ago
  
  e62eb491
Aug 13, 2019
- Add mechanism to change default config values and change conda env · a83a430c
  Constantin Pape authored 5 years ago
  
  a83a430c
Jul 09, 2019
- Update nucleus mapping script · e0c42e4e
  Constantin Pape authored 5 years ago
  
  e0c42e4e
Jul 06, 2019
- Add export scripts for cilia segmentation · f634feca
  Constantin Pape authored 5 years ago
  
  f634feca
Jun 30, 2019
- Implement anchor correction · 1c8e755e
  Constantin Pape authored 5 years ago
  
  1c8e755e
- Fix several issues in update_platy_browser · 886241a6
  Constantin Pape authored 5 years ago
  
  886241a6
Jun 27, 2019
- Add segmented prospr regions to region attributes and adapt muscle mapping · 4816b25e
  Constantin Pape authored 5 years ago
  
  4816b25e
Jun 21, 2019
- Fix name issues in attribute scripts · ce5d435b
  Constantin Pape authored 5 years ago
  
  ce5d435b
Jun 20, 2019
- Add cell region script and table · 4202df6b
  Constantin Pape authored 5 years ago
  
  4202df6b
Jun 13, 2019
- Wrap morphology calculation in cluster task; parallelize it · 224f2ea2
  Constantin Pape authored 5 years ago
  
  224f2ea2
Jun 12, 2019
- Wrap gene expression in cluster task; vectorize and parallelize computation · 2aa06f51
  Constantin Pape authored 5 years ago
  
  2aa06f51
- Simplify cell property calculation for gene attributes · 7ddc3228
  Constantin Pape authored 5 years ago
  
  7ddc3228
Jun 11, 2019
- Add test for morphology attributes · eddbc834
  Constantin Pape authored 5 years ago
  
  eddbc834
- Refactor morphology functions and simplify bounding box calculation · fe2a9c01
  Constantin Pape authored 5 years ago
  
  fe2a9c01
- Fix bug in base attributes · 560d3cea
  Constantin Pape authored 5 years ago
  
  560d3cea
- Add test for base attributes · 5e111e30
  Constantin Pape authored 5 years ago
  
  5e111e30
- PEP8 · 3682f1fe
  Constantin Pape authored 5 years ago
  
  3682f1fe
- Add morphology script · fd712ab5
  Kimberly Isobel Meechan authored 5 years ago
  
  fd712ab5
Jun 07, 2019
- Update gene script and call it for cell master table · 693f7a25
  Constantin Pape authored 5 years ago
  
  693f7a25
- PEP8 · c08565cb
  Constantin Pape authored 5 years ago
  
  c08565cb
- cleaned up · 2199c143
  Valentyna Zinchenko authored 5 years ago
  
  2199c143
- script to write gene table · b75430bc
  Valentyna Zinchenko authored 5 years ago
  
  b75430bc
Jun 05, 2019
- Add script for object mapping tables · 80c1e89b
  Constantin Pape authored 5 years ago
  
  80c1e89b
- Implement default table generation · b888ac80
  Constantin Pape authored 5 years ago
  
  b888ac80
Jun 04, 2019
- Work on skeleton implementation for update_platy_browser · c44a8fea
  Constantin Pape authored 5 years ago
  
  c44a8fea
Jun 03, 2019
- Implement scripts for base attributes and bdv export · 52f990e6
  Constantin Pape authored 5 years ago
  
  52f990e6