Commits · morphology · Christian Tischer / platy-browser-data

Feb 01, 2020
- Merge branch 'master' into 'morphology' · 25c62706
  Constantin Pape authored 5 years ago
  
  # Conflicts: # .gitignore
  25c62706
Jan 31, 2020
- Add test folder for cloud · ce4192cb
  Constantin Pape authored 5 years ago
  
  ce4192cb
- Add initial bookmark facility · 84798299
  Constantin Pape authored 5 years ago
  
  84798299
- Update compute-registration-quality.R · 66a08042
  Christian Tischer authored 5 years ago
  
  66a08042
- Add new clustering tables · f9ddd09b
  Constantin Pape authored 5 years ago
  
  f9ddd09b
- Start to implement prototype for n5 s3 folder · 65e0301a
  Constantin Pape authored 5 years ago
  
  65e0301a
Jan 30, 2020
- update comments · 8e478a6a
  Kimberly Isobel Meechan authored 5 years ago
  
  8e478a6a
Jan 29, 2020
- add back numpy thread setting · 62bb40fb
  Kimberly Isobel Meechan authored 5 years ago
  
  62bb40fb
Jan 28, 2020
- fixed calls to column generation function · f40e7e23
  Kimberly Isobel Meechan authored 5 years ago
  
  f40e7e23
- removed radial intensity for cells where nucleus area is excluded · 907c84c3
  Kimberly Isobel Meechan authored 5 years ago
  
  907c84c3
- neatened up & did docstrings · 0a4044e7
  Kimberly Isobel Meechan authored 5 years ago
  
  0a4044e7
- fixed bug with excluding the nucleus area, swapped all resize to use vigra · b8118ec1
  Kimberly Isobel Meechan authored 5 years ago
  
  b8118ec1
- separated filters into own function · c84be4c0
  Kimberly Isobel Meechan authored 5 years ago
  
  c84be4c0
- moved column generation into separate function, merged... · aad7c22f
  Kimberly Isobel Meechan authored 5 years ago
  
  moved column generation into separate function, merged compute_morphology_features function into main function
  aad7c22f
- split main function into two · 181976df
  Kimberly Isobel Meechan authored 5 years ago
  
  181976df
Jan 24, 2020
- neatened script · 8c06a726
  Kimberly Isobel Meechan authored 5 years ago
  
  8c06a726
Jan 21, 2020
- Add midgut column to region table · f19af3e3
  Constantin Pape authored 5 years ago
  
  f19af3e3
- Add midgut segmentation · 509c5b7f
  Constantin Pape authored 5 years ago
  
  509c5b7f
Nov 25, 2019
- Update ganglia table · 80eb0c64
  Constantin Pape authored 5 years ago
  
  80eb0c64
- Update ganglion table with muscle ids and rest of head · f656ffab
  Constantin Pape authored 5 years ago
  
  f656ffab
- Add initial ganglia segmentation to version 0.6.5 · 43ac1b6e
  Constantin Pape authored 5 years ago
  
  43ac1b6e
Nov 18, 2019
- Add additional table files for all versions · 85df82e8
  Constantin Pape authored 5 years ago
  
  85df82e8
Nov 14, 2019
- Update the cilia cell mapping tables · e82109d0
  Constantin Pape authored 5 years ago
  
  e82109d0
- Update annotation proofreading · b70f60c7
  Constantin Pape authored 5 years ago
  
  b70f60c7
- Squash the soft-links in latest nuclei table folder · 4d0f91fe
  Constantin Pape authored 5 years ago
  
  4d0f91fe
Nov 13, 2019
- Update patch version · 6bfcd269
  Constantin Pape authored 5 years ago
  
  0.6.5
  
  6bfcd269
Nov 11, 2019
- Fix issues with Prospr registration · 908226fc
  Constantin Pape authored 5 years ago
  
  908226fc
- Update patch version · 51853d03
  Constantin Pape authored 5 years ago
  
  0.6.4
  
  51853d03
- Update segmentation export · 0d8bdb26
  Constantin Pape authored 5 years ago
  
  0d8bdb26
Nov 08, 2019
- Merge branch 'val_and_correction' into 'master' · 8e4d2117
  Constantin Pape authored 5 years ago
  
  Segmentation validation and correction See merge request !8
  8e4d2117
- Finish (initial) implementation of segmentation correction and validation. · 0e93379d
  Constantin Pape authored 5 years ago
  
  0e93379d
Nov 07, 2019
- Add functionality to autogenerate additional table file and add it to 0.6.3 · 85d2a86d
  Constantin Pape authored 5 years ago
  
  85d2a86d
- Update prospr registration · fee6be44
  Constantin Pape authored 5 years ago
  
  0.6.3
  
  fee6be44
- Implement preliminary cilia analysis · 649e08a0
  Constantin Pape authored 5 years ago
  
  649e08a0
- Update patch version · b8ad90b5
  Constantin Pape authored 5 years ago
  
  0.6.2
  
  b8ad90b5
Nov 06, 2019
- Update patch version · fbcdee83
  Constantin Pape authored 5 years ago
  
  0.6.1
  
  fbcdee83
Nov 05, 2019
- Move registration/9.9.9 to registration/deprecated · 70aae27e
  Constantin Pape authored 5 years ago
  
  70aae27e
- Update registration files · 3de17f55
  tischi authored 5 years ago
  
  3de17f55
Nov 04, 2019
- Fix issues with segmentation attributes derived from virtual cells · b60a3891
  Constantin Pape authored 5 years ago
  
  b60a3891
Oct 28, 2019
- Merge branch 'master' of https://git.embl.de/tischer/platy-browser-tables · b0dbb207
  Constantin Pape authored 5 years ago
  
  b0dbb207