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Christian Tischer
platy-browser-data
Merge requests
!9
Morphology
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Morphology
morphology
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master
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Kimberly Isobel Meechan
requested to merge
morphology
into
master
5 years ago
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Updated morphology_impl - main function split into one for cells and one for nuclei
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62bb40fb
add back numpy thread setting
· 62bb40fb
Kimberly Isobel Meechan
authored
5 years ago
scripts/extension/attributes/morphology_impl.py
+
2
−
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from
datetime
import
datetime
# TODO - uncomment this part
# this is a task called by multiple processes,
# so we need to restrict the number of threads used by numpy
# from cluster_tools.utils.numpy_utils import set_numpy_threads
# set_numpy_threads(1)
from
tmp.numpy_utils
import
set_numpy_threads
from
cluster_tools.utils.numpy_utils
import
set_numpy_threads
set_numpy_threads
(
1
)
import
numpy
as
np
import
vigra
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