@@ -38,7 +38,7 @@ Minimum system requirements vary based on the use case. We highly recommend runn
MosaiCatcher leverages snakemake built-in features such as execution within container and conda predefined modular environments. That's why it is only necessary to create an environment that relies on [snakemake](https://github.com/snakemake/snakemake)(to execute the pipeline) and [pandas](https://github.com/pandas-dev/pandas)(to handle basic configuration). If you plan to generate HTML Web report including plots, it is also necessary to install [imagemagick](https://github.com/ImageMagick/ImageMagick).
If possible, it is also highly recommanded to install and use mamba package manager instead of conda, which is much more efficient.
If possible, it is also highly recommended to install and use mamba package manager instead of conda, which is much more efficient.
```
conda install -c conda-forge mamba
...
...
@@ -107,10 +107,10 @@ The `--config` argument will here overrides value of each of the keys present in
Following commands allow to retrieve 1000G VCF file (+ .tbi index) as well as Fasta reference genome file (+ .fai index).
