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2c3fe3ee · Sascha Meiers · 0887883f · 2c3fe3ee
Commit 2c3fe3ee authored 7 years ago by Sascha Meiers
--- a/Snakefile
+++ b/Snakefile
@@ -290,10 +290,10 @@ rule prepare_strandphaser_config_per_chrom:


 def locate_snv_vcf(wildcards):
-	if config["snv_calls"] == "":
-		return "snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom)
-	else:
-		return "external_snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom)
+    if config["snv_calls"] == "":
+        return "snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom)
+    else:
+        return "external_snv_calls/{}.{}.vcf".format(config["sample"], wildcards.chrom)

 rule run_strandphaser_per_chrom:
    input: