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Thomas Weber
Mosaicatcher Update
Commits
7947b787
Commit
7947b787
authored
7 years ago
by
Tobias Marschall
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Mention BSgenome.Hsapiens.UCSC.hg38
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@@ -10,7 +10,12 @@ Preliminary SV calling using Strand-seq data - summarized in a [Snakemake](https
*
Install
[
mosaicatcher
](
https://github.com/friendsofstrandseq/mosaicatcher
)
(
*currently
you will need the
`develop`
branch
*
)
*
Get the R-scripts from
[
strandsequtils
](
https://github.com/friendsofstrandseq/strandsequtils
)
*
Install
[
Strand-Phaser
](
https://github.com/daewoooo/StrandPhaseR
)
*
Install BSgenome.Hsapiens.UCSC.hg38:
```
source("https://bioconductor.org/biocLite.R")
biocLite('BSgenome.Hsapiens.UCSC.hg38')
```
*
[
Strand-Phaser
](
https://github.com/daewoooo/StrandPhaseR
)
is installed automagically
2.
**Set up the configuration of the smakemake pipeline**
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