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Commit 7947b787 authored by Tobias Marschall's avatar Tobias Marschall
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Mention BSgenome.Hsapiens.UCSC.hg38

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......@@ -10,7 +10,12 @@ Preliminary SV calling using Strand-seq data - summarized in a [Snakemake](https
* Install [mosaicatcher](https://github.com/friendsofstrandseq/mosaicatcher) (*currently you will need the `develop` branch*)
* Get the R-scripts from [strandsequtils](https://github.com/friendsofstrandseq/strandsequtils)
* Install [Strand-Phaser](https://github.com/daewoooo/StrandPhaseR)
* Install BSgenome.Hsapiens.UCSC.hg38:
```
source("https://bioconductor.org/biocLite.R")
biocLite('BSgenome.Hsapiens.UCSC.hg38')
```
* [Strand-Phaser](https://github.com/daewoooo/StrandPhaseR) is installed automagically
2. **Set up the configuration of the smakemake pipeline**
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