Split into files ; define modes & associated conda envs ; run on a single...
Split into files ; define modes & associated conda envs ; run on a single chromosome by keeping full initial BAM ; functionnal until strandphaser
Showing
- src/iocounts.hpp 332 additions, 0 deletionssrc/iocounts.hpp
- src/main.cpp 72 additions, 0 deletionssrc/main.cpp
- src/ploidy.hpp 523 additions, 0 deletionssrc/ploidy.hpp
- src/program_options.hpp 40 additions, 0 deletionssrc/program_options.hpp
- src/sces.hpp 503 additions, 0 deletionssrc/sces.hpp
- src/segmentation.hpp 867 additions, 0 deletionssrc/segmentation.hpp
- src/simulate.hpp 989 additions, 0 deletionssrc/simulate.hpp
- src/utils.hpp 207 additions, 0 deletionssrc/utils.hpp
- src/version.hpp.in 14 additions, 0 deletionssrc/version.hpp.in
- utils/process_example_data.py 42 additions, 0 deletionsutils/process_example_data.py
- workflow/.conda/environments.txt 2 additions, 0 deletionsworkflow/.conda/environments.txt
- workflow/Snakefile 208 additions, 0 deletionsworkflow/Snakefile
- workflow/config/config.yaml 110 additions, 0 deletionsworkflow/config/config.yaml
- workflow/config/config_df.tsv 511 additions, 0 deletionsworkflow/config/config_df.tsv
- workflow/config/exclude_file.txt 194 additions, 0 deletionsworkflow/config/exclude_file.txt
- workflow/envs/imagemagick.yaml 5 additions, 0 deletionsworkflow/envs/imagemagick.yaml
- workflow/envs/mc_base.yaml 11 additions, 0 deletionsworkflow/envs/mc_base.yaml
- workflow/envs/mc_bioinfo_tools.yaml 10 additions, 0 deletionsworkflow/envs/mc_bioinfo_tools.yaml
- workflow/envs/plots.yaml 11 additions, 0 deletionsworkflow/envs/plots.yaml
- workflow/envs/strandphaser.yaml 24 additions, 0 deletionsworkflow/envs/strandphaser.yaml
Loading
Please register or sign in to comment