New folders

dataproc/api/serializers.py

+from rest_framework import serializers
+from dataproc.models import Contruct
+
+
+class ContructSerializer(serializers.ModelSerializer):
+	class Meta:
+		model = Contruct
+		fields = ['title', 'created_at', 'updated_at',]
\ No newline at end of file

dataproc/api/urls.py

+from django.urls import path
+from dataproc.api.views import(
+	api_detail_construct_view,
+	api_update_construct_view,
+	api_delete_construct_view,
+	api_create_construct_view,
+)
+
+app_name = 'dataproc'
+
+urlpatterns = [
+	path('<slug>/', api_detail_construct_view, name="detail"),
+	path('<slug>/update', api_update_construct_view, name="update"),
+	path('<slug>/delete', api_delete_construct_view, name="delete"),
+	path('create', api_create_construct_view, name="create"),
+]
\ No newline at end of file

dataproc/api/views.py

+from rest_framework import status
+from rest_framework.response import Response
+from rest_framework.decorators import api_view
+
+from dataproc.models import Construct
+from dataproc.api.serializers import ConstructSerializer
+
+SUCCESS = 'success'
+ERROR = 'error'
+DELETE_SUCCESS = 'deleted'
+UPDATE_SUCCESS = 'updated'
+CREATE_SUCCESS = 'created'
+
+@api_view(['GET', ])
+def api_detail_construct_view(request, slug):
+
+	try:
+		construct = Construct.objects.get(slug=slug)
+	except Construct.DoesNotExist:
+		return Response(status=status.HTTP_404_NOT_FOUND)
+
+	if request.method == 'GET':
+		serializer = ConstructSerializer(blog_post)
+		return Response(serializer.data)
+
+
+@api_view(['PUT',])
+def api_update_construct_view(request, slug):
+
+	try:
+		construct = Construct.objects.get(slug=slug)
+	except Construct.DoesNotExist:
+		return Response(status=status.HTTP_404_NOT_FOUND)
+
+	if request.method == 'PUT':
+		serializer = ConstructSerializer(construct, data=request.data)
+		data = {}
+		if serializer.is_valid():
+			serializer.save()
+			data['SUCCESS'] = UPDATE_SUCCESS
+			return Response(data=data)
+		return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
+
+
+@api_view(['DELETE',])
+def api_delete_blog_view(request, slug):
+
+	try:
+		construct = Construct.objects.get(slug=slug)
+	except Construct.DoesNotExist:
+		return Response(status=status.HTTP_404_NOT_FOUND)
+
+	if request.method == 'DELETE':
+		operation = construct.delete()
+		data = {}
+		if operation:
+			data['SUCCESS'] = DELETE_SUCCESS
+		return Response(data=data)
+
+
+@api_view(['POST'])
+def api_create_construct_view(request):
+
+	construct = Construct()
+
+	if request.method == 'POST':
+		serializer = ConstructSerializer(construct, data=request.data)
+		data = {}
+		if serializer.is_valid():
+			serializer.save()
+			return Response(serializer.data, status=status.HTTP_201_CREATED)
+		return Response(serializer.errors, status=status.HTTP_400_BAD_REQUEST)
\ No newline at end of file

mynewapi/apps.py → dataproc/apps.py

 from django.apps import AppConfig
 
 
-class MynewapiConfig(AppConfig):
-    name = 'mynewapi'
+class apiConfig(AppConfig):
+    name = 'api'

dataproc/models.py

+# from django.db import models
+# from neomodel import StructuredNode, StringProperty, IntegerProperty,UniqueIdProperty, RelationshipTo, DateTimeProperty, BooleanProperty
+
+# class City(StructuredNode):
+#     code = StringProperty(unique_index=True, required=True)
+#     name = StringProperty(index=True, default="city")
+
+from django.db import models
+from django.utils.text import slugify
+from django.conf import settings
+
+class Contruct(models.Model):
+	title 				= models.CharField(max_length=50, null=False, blank=True)
+	created_at	 		= models.DateTimeField(auto_now_add=True, verbose_name="created at")
+	updated_at	 		= models.DateTimeField(auto_now=True, verbose_name="updated at")
+	slug 				= models.SlugField(blank=True, unique=True)
+
+	def __str__(self):
+		return self.title
+		
+#####################################
+# Nodes and properties of the model #
+#####################################
+
+# class LigandsFitting(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	dp_step_name = StringProperty()
+# 	created_at=DateTimeProperty()
+# 	updated_at=DateTimeProperty()
+# 	pipedream_id=IntegerProperty()
+# 	score=IntegerProperty()
+# 	fitting_success=BooleanProperty()
+
+# class Refinement(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	dp_step_name=StringProperty()
+# 	created_at=DateTimeProperty()
+# 	updated_at=DateTimeProperty()
+
+# class PostRefinement(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	dp_step_name=StringProperty()
+# 	pipedream_id=IntegerProperty()
+# 	created_at=DateTimeProperty()
+# 	updated_at=DateTimeProperty()
+
+# class ReductionScaling(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	dp_step_name=StringProperty()
+# 	created_at=DateTimeProperty()
+# 	updated_at=DateTimeProperty()
+
+# class autoPROC(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	tool_name=StringProperty()
+
+# class Buster(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	tool_name=StringProperty()
+
+# class Rhofit(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	tool_name=StringProperty()
+
+# class StatisticalReport(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	report_name=StringProperty()
+
+# class ComputingHost(StructuredNode):
+# 	ch_softwares=StringProperty()
+# 	ch_softwares_number=IntegerProperty()
+
+# class StorageHost(StructuredNode):
+# 	sh_files=StringProperty()
+# 	sh_files_number=IntegerProperty()
+
+# class Report(StructuredNode):
+#  	report_path=StringProperty()
+#  	report_source=StringProperty()
+#  	report_size=StringProperty()
+
+#  	# Relationships
+#  	is_statisticalreport=RelationshipTo(StatisticalReport, 'IS')
+
+# class RefelctionStructureFactors(StructuredNode):
+#  	rsf_source=StringProperty()
+#  	rsf_filesize=StringProperty()
+#  	rsf_filepath=StringProperty()
+
+#  	# Relationships
+#  	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
+#  	input_of=RelationshipTo(DPStep, 'INPUT')
+#  	generates_mtz=RelationshipTo(MTZfile, 'GENERATES')
+#  	generates_scalepack=RelationshipTo(ScalepackFile, 'GENERATES')
+#  	labelled=RelationshipTo(Reference, 'LABELLED')
+#  	belongs=RelationshipTo(Construct, 'BELONGS')
+
+# class DPStep(StructuredNode):
+ 	
+#  	# Relationships
+#  	is_fitting=RelationshipTo(LigandsFitting, 'IS')
+#  	is_refinement=RelationshipTo(Refinement, 'IS')
+#  	is_postrefinement=RelationshipTo(PostRefinement, 'IS')
+#  	is_reductionscaling=RelationshipTo(ReductionScaling, 'IS')
+#  	with_tool_1=RelationshipTo(autoPROC, 'WITH')
+#  	with_tool_2=RelationshipTo(Rhofit, 'WITH')
+#  	with_tool_3=RelationshipTo(Buster, 'WITH')
+#  	genereates_report=RelationshipTo(Report, 'GENERATES')
+#  	# generates_coordinates=RelationshipTo(Coordinates, 'GENERATES')
+#  	generates_rsf=RelationshipTo(RefelctionStructureFactors, 'GENERATES')
+
+# class Coordinates(StructuredNode):
+#  	coordinates_source=StringProperty(unique_index=True, required=True)
+#  	coordinates_filesize=StringProperty(unique_index=True, required=True)
+#  	coordinates_filepath=StringProperty(unique_index=True, required=True)
+
+#  	# Relationships
+#  	input_as_ref=RelationshipTo(DPStep, 'INPUT_AS_REFERENCE')
+#  	input_of=RelationshipTo(DPStep, 'INPUT')
+#  	has_pdb=RelationshipTo(PDBFile, 'HAS')
+#  	has_mmcif=RelationshipTo(mmCIFFile, 'HAS')
+#  	belongs=RelationshipTo(Construct, 'BELONGS')
+#  	labelled=RelationshipTo(Reference, 'LABELLED')
+
+
+# class DataCollection (StructuredNode):
+#  	collection_type=StringProperty()
+#  	collection_size=StringProperty()
+
+#  	# Relationships
+#  	genereates_dataset=RelationshipTo(Datatset, 'GENERATES')
+
+# class Datatset(StructuredNode):
+#  	dataset_file_no=IntegerProperty()
+#  	dataset_size=StringProperty()
+
+#  	# Relationships
+#  	input_of=RelationshipTo(DPStep, 'INPUT')
+#  	stored=RelationshipTo(StorageHost, 'STORED')
+#  	belongs=RelationshipTo(Construct, 'BELONGS')
+
+# class mmCIFFile(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	coordinates_filetype=StringProperty(unique_index=True, required=True)
+
+# class PDBFile(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	coordinates_filetype=StringProperty(unique_index=True, required=True)
+
+# class MTZfile(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	rsf_filetype = StringProperty(unique_index=True, required=True)
+
+# class ScalepackFile(StructuredNode):
+# 	uid=UniqueIdProperty()
+# 	rsf_filetype = StringProperty(unique_index=True, required=True)
+
+# class Reference(StructuredNode):
+# 	uid=UniqueIdProperty()
+
+# class OCF(StructuredNode):
+	
+# 	# Relationships
+# 	has_rsf=RelationshipTo(RefelctionStructureFactors, 'HAS')
+# 	has_coordinates=RelationshipTo(Coordinates, 'HAS')
+
+# class Construct(StructuredNode):
+	
+# 	# Relationships
+# 	has_ocf=RelationshipTo(OCF, 'HAS')
+# 	has_storage_host=RelationshipTo(StorageHost, 'HAS')
+# 	has_computing_host=RelationshipTo(ComputingHost, 'HAS')
+
+
+# class Ligand(StructuredNode):
+	 
+# 	# Relationships
+#  	associated=RelationshipTo(Datatset, 'ASSOCIATED')
+

dataproc/settings.py

+"""
+Django settings for newapi project.
+
+Generated by 'django-admin startproject' using Django 3.1.6.
+
+For more information on this file, see
+https://docs.djangoproject.com/en/3.1/topics/settings/
+
+For the full list of settings and their values, see
+https://docs.djangoproject.com/en/3.1/ref/settings/
+"""
+
+from pathlib import Path
+import os 
+from decouple import config
+
+# Build paths inside the project like this: BASE_DIR / 'subdir'.
+BASE_DIR = Path(__file__).resolve().parent.parent
+
+
+# Quick-start development settings - unsuitable for production
+# See https://docs.djangoproject.com/en/3.1/howto/deployment/checklist/
+
+# SECURITY WARNING: keep the secret key used in production secret!
+SECRET_KEY = '=013nqbp3o8hr9e*it$b1um^%ke*uxqvt5qnp=xe6@^20a)d!b'
+
+# SECURITY WARNING: don't run with debug turned on in production!
+DEBUG = True
+
+ALLOWED_HOSTS = []
+
+
+# Application definition
+
+INSTALLED_APPS = [
+    
+    #django apps
+    'django.contrib.admin',
+    'django.contrib.auth',
+    'django.contrib.contenttypes',
+    'django.contrib.sessions',
+    'django.contrib.messages',
+    'django.contrib.staticfiles',
+    'django_neomodel'
+    'rest_framework'
+
+
+    #My apps
+    'dataproc',
+]
+
+MIDDLEWARE = [
+    'django.middleware.security.SecurityMiddleware',
+    'django.contrib.sessions.middleware.SessionMiddleware',
+    'django.middleware.common.CommonMiddleware',
+    'django.middleware.csrf.CsrfViewMiddleware',
+    'django.contrib.auth.middleware.AuthenticationMiddleware',
+    'django.contrib.messages.middleware.MessageMiddleware',
+    'django.middleware.clickjacking.XFrameOptionsMiddleware',
+]
+
+ROOT_URLCONF = 'newapi.urls'
+
+TEMPLATES = [
+    {
+        'BACKEND': 'django.template.backends.django.DjangoTemplates',
+        'DIRS': [],
+        'APP_DIRS': True,
+        'OPTIONS': {
+            'context_processors': [
+                'django.template.context_processors.debug',
+                'django.template.context_processors.request',
+                'django.contrib.auth.context_processors.auth',
+                'django.contrib.messages.context_processors.messages',
+            ],
+        },
+    },
+]
+
+WSGI_APPLICATION = 'newapi.wsgi.application'
+
+
+# Database
+# https://docs.djangoproject.com/en/3.1/ref/settings/#databases
+
+DATABASES = {
+    'default': {
+        'ENGINE': 'django.db.backends.sqlite3',
+        'NAME': BASE_DIR / 'db.sqlite3',
+    }
+}
+
+NEOMODEL_NEO4J_BOLT_URL = os.environ.get('NEO4J_BOLT_URL','bolt://neo4j:neo4@localhost:7687')
+
+
+
+# Password validation
+# https://docs.djangoproject.com/en/3.1/ref/settings/#auth-password-validators
+
+AUTH_PASSWORD_VALIDATORS = [
+    {
+        'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
+    },
+    {
+        'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
+    },
+    {
+        'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
+    },
+    {
+        'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
+    },
+]
+
+
+# Internationalization
+# https://docs.djangoproject.com/en/3.1/topics/i18n/
+
+LANGUAGE_CODE = 'en-us'
+
+TIME_ZONE = 'UTC'
+
+USE_I18N = True
+
+USE_L10N = True
+
+USE_TZ = True
+
+
+# Static files (CSS, JavaScript, Images)
+# https://docs.djangoproject.com/en/3.1/howto/static-files/
+
+STATIC_URL = '/static/'

dataproc/tests/test_urls.py

+from django.test import SimpleTestCase
+from django.urls import reverse, resolve
+
+class TestUrls(SimpleTestCase):
+
+	def {test_url}(self):
+		url = reverse('{url_route}')
+		self.assertEquals(resolve(url).func, )
+