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Paul Igor Costea
metaSNV
Commits
ebe1b41d
Commit
ebe1b41d
authored
7 years ago
by
Robin Erich Muench
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updated help message
parent
907adcf8
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metaSNV.py
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ebe1b41d
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@@ -227,7 +227,7 @@ def main():
help
=
'
File with an input list of bam files, one file per line
'
)
parser
.
add_argument
(
"
ref_db
"
,
metavar
=
'
REF_DB_FILE
'
,
help
=
'
reference multi-sequence FASTA file used for the alignments.
'
)
parser
.
add_argument
(
'
--db_ann
'
,
metavar
=
'
BED
_FILE
'
,
default
=
''
,
parser
.
add_argument
(
'
--db_ann
'
,
metavar
=
'
DB_ANN
_FILE
'
,
default
=
''
,
help
=
'
Database gene annotation.
'
)
parser
.
add_argument
(
'
--print-commands
'
,
default
=
False
,
action
=
'
store_true
'
,
help
=
'
Instead of executing the commands, simply print them out
'
)
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