Commit ebe1b41d authored by Robin Erich Muench's avatar Robin Erich Muench

updated help message

parent 907adcf8
......@@ -227,7 +227,7 @@ def main():
help='File with an input list of bam files, one file per line')
parser.add_argument("ref_db", metavar='REF_DB_FILE',
help='reference multi-sequence FASTA file used for the alignments.')
parser.add_argument('--db_ann', metavar='BED_FILE',default='',
parser.add_argument('--db_ann', metavar='DB_ANN_FILE',default='',
help='Database gene annotation.')
parser.add_argument('--print-commands', default=False, action='store_true',
help='Instead of executing the commands, simply print them out')
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