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metaSNV
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Paul Igor Costea
metaSNV
Commits
ebe1b41d
Commit
ebe1b41d
authored
Apr 29, 2017
by
Robin Erich Muench
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updated help message
parent
907adcf8
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metaSNV.py
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ebe1b41d
...
...
@@ -227,7 +227,7 @@ def main():
help
=
'File with an input list of bam files, one file per line'
)
parser
.
add_argument
(
"ref_db"
,
metavar
=
'REF_DB_FILE'
,
help
=
'reference multi-sequence FASTA file used for the alignments.'
)
parser
.
add_argument
(
'--db_ann'
,
metavar
=
'
BED
_FILE'
,
default
=
''
,
parser
.
add_argument
(
'--db_ann'
,
metavar
=
'
DB_ANN
_FILE'
,
default
=
''
,
help
=
'Database gene annotation.'
)
parser
.
add_argument
(
'--print-commands'
,
default
=
False
,
action
=
'store_true'
,
help
=
'Instead of executing the commands, simply print them out'
)
...
...
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