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Nicolas Descostes
singularityhub-EMBLRome
Commits
3bd89b6a
Commit
3bd89b6a
authored
2 years ago
by
Nicolas Descostes
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try downloading directly from quay.io
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!13
fasterq hidden macs2 picard
,
!12
deeptools last version
,
!11
bowtie2
,
!10
bowtie2
Pipeline
#32251
passed
2 years ago
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recipes/mapping/bowtie2/Singularity.bowtie2-245
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3bd89b6a
Boot
S
trap: docker
From:
ubuntu:hirsute
Boot
s
trap: docker
From:
quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2
%help
This singularity install bowtie2 v2.4.5
%runscript
echo "Running container quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2, Bowtie v2.4.5"
exec /bin/bash "$@"
%post
# ~~~~~~ General setup and folder creation ~~~~~~ #
apt-get update && apt-get install -y wget bzip2 debootstrap
# ~~~~~ MINICONDA 3.4.0.5 ~~~~~ #
wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh && \
bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /conda && \
rm -f Miniconda3-4.7.12.1-Linux-x86_64.sh
export PATH="/conda/bin:${PATH}"
# ~~~~~ bowtie2 2.4.5 ~~~~~ #
conda install -y -c bioconda bowtie2=2.4.5
%environment
export PATH="${PATH}:/conda/bin"
mkdir /cluster /work /tsd /projects
%labels
Author Nicolas Descostes
Version v0.0.1
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