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Commit 3bd89b6a authored by Nicolas Descostes's avatar Nicolas Descostes
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try downloading directly from quay.io

parent 1bbd5eb6
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4 merge requests!13fasterq hidden macs2 picard,!12deeptools last version,!11bowtie2,!10bowtie2
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BootStrap: docker Bootstrap: docker
From: ubuntu:hirsute From: quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2
%help %runscript
This singularity install bowtie2 v2.4.5 echo "Running container quay.io/biocontainers/bowtie2:2.4.5--py36hfca12d5_2, Bowtie v2.4.5"
exec /bin/bash "$@"
%post %post
mkdir /cluster /work /tsd /projects
# ~~~~~~ General setup and folder creation ~~~~~~ #
apt-get update && apt-get install -y wget bzip2 debootstrap
# ~~~~~ MINICONDA 3.4.0.5 ~~~~~ #
wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh && \
bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p /conda && \
rm -f Miniconda3-4.7.12.1-Linux-x86_64.sh
export PATH="/conda/bin:${PATH}"
# ~~~~~ bowtie2 2.4.5 ~~~~~ #
conda install -y -c bioconda bowtie2=2.4.5
%environment
export PATH="${PATH}:/conda/bin"
%labels %labels
Author Nicolas Descostes Author Nicolas Descostes
Version v0.0.1
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