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grp-ellenberg
Genome_organization_cattoglio_2019
Commits
5db01354
Commit
5db01354
authored
Jan 17, 2019
by
Nike Walther
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# Source code assoicated with the article Cattaglio et al., Biorxiv, 2018
# Source code associated with the article Cattoglio et al., Biorxiv, 2018
>**Architectural Features of 3D Genome Organization Revealed by Counting CTCF and
Cohesin Molecules
**
Claudia Cattoglio, Iryna Pustova, Jaclyn J Ho, Carla J Inouye, Gina M Dailey,
...
...
@@ -7,17 +6,17 @@ Xavier Darzacq, Robert Tjian, Anders S Hansen
doi: https://doi.org/10.1101/370650
## Functionality
This code package segments lanmarks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as
volume total intensity,
in the
This code package segments lan
d
marks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as
the total intensity
in the
whole cell as well as in the nuclear and cytoplasmic compartments.
This package
has been generated by adapting the segmentation and par
meter
extraction pipeline from C
AI and Hossain et al., Nature
2018.
This package
was generated by adapting the segmentation and para
meter
extraction pipeline from C
ai and Hossain et al., Nature,
2018.
# How to run
Set the running options and default parameters in fn_running_options.m file
and execute ls_segment_landmarks_main.m file.
Set the running options and default parameters in
the
fn_running_options.m file
and execute
the
ls_segment_landmarks_main.m file.
# Author
M. Julius Hossain, EMBL Heidelberg.
M. Julius Hossain, EMBL Heidelberg
, 2018
.
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