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GBCS
Je
Commits
59a47500
Commit
59a47500
authored
Jun 21, 2017
by
Jelle Scholtalbers
Browse files
update galaxy wrappers to release_1.1
parent
dd9e62bd
Changes
6
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src/galaxy/README.md
View file @
59a47500
...
...
@@ -15,5 +15,5 @@ Look at the result and then update the main toolshed.
## Update toolshed
``planemo shed_update``
``planemo shed_update
--shed_target toolshed
``
src/galaxy/je-clip.xml
View file @
59a47500
<tool
id=
"je_clip"
name=
"Je-Clip"
version=
"
1.0
"
>
<tool
id=
"je_clip"
name=
"Je-Clip"
version=
"
@VERSION_STRING@
"
>
<description>
clips Unique Molecular Identifiers (UMIs) from fastq files
</description>
<macros>
<import>
macros.xml
</import>
...
...
src/galaxy/je-demultiplex-illu.xml
View file @
59a47500
<tool
id=
"je_demultiplex_illu"
name=
"Je-Demultiplex-Illu"
version=
"
1.0
"
>
<tool
id=
"je_demultiplex_illu"
name=
"Je-Demultiplex-Illu"
version=
"
@VERSION_STRING@
"
>
<description>
demultiplexes fastq files using Illumina Index file
</description>
<macros>
<import>
macros.xml
</import>
...
...
src/galaxy/je-demultiplex.xml
View file @
59a47500
<tool
id=
"je_demultiplex"
name=
"Je-Demultiplex"
version=
"
1.0
"
>
<tool
id=
"je_demultiplex"
name=
"Je-Demultiplex"
version=
"
@VERSION_STRING@
"
>
<description>
demultiplexes fastq files
</description>
<macros>
<import>
macros.xml
</import>
...
...
src/galaxy/je-markdupes.xml
View file @
59a47500
<tool
id=
"je_markdupes"
name=
"Je-MarkDuplicates"
version=
"
1.0
"
>
<tool
id=
"je_markdupes"
name=
"Je-MarkDuplicates"
version=
"
@VERSION_STRING@
"
>
<description>
to filter BAM files for read duplicates taking UMIs into account
</description>
<macros>
<import>
macros.xml
</import>
...
...
src/galaxy/macros.xml
View file @
59a47500
<macros>
<token
name=
"@VERSION_STRING@"
>
1.1
</token>
<token
name=
"@single_or_paired_cmd@"
>
#if str( $library.type ) == "single":
F1=${library.input_1}
...
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