Commits · 38f96f46c27ed3163c73e2b2f46e5b4c924463de · Christian Tischer / platy-browser-data · GitLab

Snippets Groups Projects

Oct 04, 2019
- Add scripts for masking extrapolated cells and nuclei · 38f96f46
  Constantin Pape authored 5 years ago
  
  38f96f46
- Merge branch 'new-vc' into 'master' · 470f4231
  Constantin Pape authored 5 years ago
  
  VC gene assignments See merge request !7
  470f4231
- Fix issues in vc assignment scripts · 12bd0d59
  Constantin Pape authored 5 years ago
  
  12bd0d59
- Add vc assignment implementation and update gene overlap assignment scripts · 0d49ef32
  Constantin Pape authored 5 years ago
  
  0d49ef32
Oct 03, 2019
- Register virtual-cells with prospr · a6765622
  Constantin Pape authored 5 years ago
  
  a6765622
- Update patch version · 0570f294
  Constantin Pape authored 5 years ago
  
  0.5.5
  
  0570f294
- Fix issues in region attributes · 1aaf8ebb
  Constantin Pape authored 5 years ago
  
  1aaf8ebb
Oct 02, 2019
- Fix issue in gene table · 4f876e5e
  Constantin Pape authored 5 years ago
  
  4f876e5e
- Update scripts for intensity correction and downscaling · 38117e7e
  Constantin Pape authored 5 years ago
  
  38117e7e
Oct 01, 2019
- Update prospr names in images.json · f79e27b4
  Constantin Pape authored 5 years ago
  
  f79e27b4
- Implement workflow for raw data intensity correction · 12e90e01
  Constantin Pape authored 5 years ago
  
  12e90e01
Sep 30, 2019
- Rename ato3 to ato2 · 0729f751
  Constantin Pape authored 5 years ago
  
  0729f751
Sep 27, 2019
- Fix issues in version 0.5.4 genes · d2a53e13
  Constantin Pape authored 5 years ago
  
  0.5.4
  
  d2a53e13
- Update registration mechanism and fix edu names · 07e9d627
  Constantin Pape authored 5 years ago
  
  07e9d627
Sep 26, 2019
- Implement proper registration wrapper test and fix elastix config parser issue · a92a627c
  Constantin Pape authored 5 years ago
  
  a92a627c
- Fix issues in apply registrations script · 7b20f5d4
  Constantin Pape authored 5 years ago
  
  7b20f5d4
- Add version 0.5.4 and remove pre-release · ef3e96b9
  Constantin Pape authored 5 years ago
  
  ef3e96b9
- Update README · c6ae7f77
  Constantin Pape authored 5 years ago
  
  c6ae7f77
- Enable setting registration mode in apply_registration · 261ccb84
  Constantin Pape authored 5 years ago
  
  261ccb84
- Rename registration folder from 0.5.4-pre to 0.5.4 · 9ae7a62d
  Constantin Pape authored 5 years ago
  
  9ae7a62d
Sep 25, 2019
- Add gene volume and table update to update_registration script · 0a7d67c3
  Constantin Pape authored 5 years ago
  
  0a7d67c3
Sep 24, 2019
- Add new regestration (tentative) · 8396944b
  Constantin Pape authored 5 years ago
  
  8396944b
- Update registration scripts · 60bcd005
  Constantin Pape authored 5 years ago
  
  60bcd005
Sep 23, 2019
- Add more registration scripts · 6b0c921f
  Constantin Pape authored 5 years ago
  
  6b0c921f
- Update default conda env · e80707f1
  Constantin Pape authored 5 years ago
  
  e80707f1
- Merge branch 'registration-wrapper' into 'master' · 215c13cd
  Constantin Pape authored 5 years ago
  
  Add python scripts to run registration on the cluster See merge request !6
  215c13cd
- Update apply_registration · e8bec9d1
  Constantin Pape authored 5 years ago
  
  e8bec9d1
Sep 20, 2019
- Add simpler check for registration wrapper · 975cc6b3
  Constantin Pape authored 5 years ago
  
  975cc6b3
- Update muscle segmentation scripts · 55a9a5f0
  Constantin Pape authored 5 years ago
  
  55a9a5f0
- Add version tag · f620989f
  Constantin Pape authored 5 years ago
  
  f620989f
- Add new patch version · 8be6d5b9
  Constantin Pape authored 5 years ago
  
  0.5.3
  
  8be6d5b9
- Debugging apply_registration WIP · 0af98c8a
  Constantin Pape authored 5 years ago
  
  0af98c8a
- Use proper scale factors in export_segmentation · 66bdc9bb
  Constantin Pape authored 5 years ago
  
  66bdc9bb
- Implement simple table propagation and update cilia attributes · a49fb421
  Constantin Pape authored 5 years ago
  
  a49fb421
- Update registration wrapper · 38cfadd7
  Constantin Pape authored 5 years ago
  
  38cfadd7
Sep 19, 2019
- Update version control for registration scripts · d4bacc74
  Constantin Pape authored 5 years ago
  
  d4bacc74
Sep 18, 2019
- Use string for transformix command · 894c5930
  Constantin Pape authored 5 years ago
  
  894c5930
- Fix some issues in registration wrapper and add script to check it · 7fd8291d
  Constantin Pape authored 5 years ago
  
  7fd8291d
Sep 16, 2019
- Add python scripts to run registration on the cluster · dd0aa99e
  Constantin Pape authored 5 years ago
  
  dd0aa99e
- Merge branch 'master' of https://git.embl.de/tischer/platy-browser-tables · fcd32714
  Constantin Pape authored 5 years ago
  
  fcd32714