Generate clustering plots for all samples/methods

Snakefile

@@ -100,6 +100,12 @@ rule all:
                bpdens = BPDENS,
                method = METHODS,
                plottype = ["byaf","bypos"]),
+        expand("sv_calls/{sample}/{window}_fixed_norm.{bpdens}/plots/sv_clustering/{method}-{plottype}.pdf",
+               sample = SAMPLES,
+               window = [100000],
+               bpdens = BPDENS,
+               method = METHODS,
+               plottype = ["position","chromosome"]),
         expand("halo/{sample}/{window}_{suffix}.json.gz",
                sample = SAMPLES,
                window = [100000],