Commits · be1e27f64c1e275904d2a939c67fd67ad086389c · Christian Arnold / ATACSeq_Snakemake

Aug 23, 2019
- Added the file runSnakemake.sh for an example call to Snakemake with Singularity · be1e27f6
  Christian Arnold authored 5 years ago
  
  be1e27f6
- Cleanup · d09c49de
  Christian Arnold authored 5 years ago
  
  d09c49de
- Cleanup · 17701599
  Christian Arnold authored 5 years ago
  
  17701599
- Update README · d0ede272
  Christian Arnold authored 5 years ago
  
  d0ede272
- Add LICENSE · 62b8ae10
  Christian Arnold authored 5 years ago
  
  62b8ae10
- Added example data · b9119d37
  Christian Arnold authored 5 years ago
  
  b9119d37
- Various small changes · 119127d1
  Christian Arnold authored 5 years ago
  
  119127d1
May 31, 2019
- Many minor changes · bd9d91dd
  Christian Arnold authored 5 years ago
  
  bd9d91dd
Oct 09, 2018
- Updated template files · 86f39aac
  Christian Arnold authored 6 years ago
  
  86f39aac
- Adjusted bamCoverage rule for deepTools version >=3. For older deepTool... · 89435ec8
  Christian Arnold authored 6 years ago
  
  Adjusted bamCoverage rule for deepTools version >=3. For older deepTool versions, it will not work anymore.
  89435ec8
Oct 04, 2018
- cleanup · e4451260
  Christian Arnold authored 6 years ago
  
  e4451260
- Updated documentation · 1b8e52fc
  Christian Arnold authored 6 years ago
  
  1b8e52fc
- Various updates and improvements · 0a4ef72a
  Christian Arnold authored 6 years ago
  
  0a4ef72a
Jun 27, 2018
- Updated Pipeline · 15f00315
  Christian Arnold authored 6 years ago
  
  15f00315
Jun 20, 2018
- Updated documentation and examples · a6dd8563
  Christian Arnold authored 6 years ago
  
  a6dd8563
Jun 12, 2018
- Bigger update, provided templates, updated code · a1e44da9
  Christian Arnold authored 6 years ago
  
  a1e44da9
Oct 25, 2017
- SLURM customization · bcb839cd
  Christian Arnold authored 7 years ago
  
  bcb839cd
- cleanup2 · ffb26679
  Christian Arnold authored 7 years ago
  
  ffb26679
- cleanup · fe2dd662
  Christian Arnold authored 7 years ago
  
  fe2dd662
- adjusted for SLURM · 2bb28c51
  Christian Arnold authored 7 years ago
  
  2bb28c51
Jun 14, 2017
- Updated respository, adding new working example, minor changes · 0e0162c3
  Christian Arnold authored 7 years ago
  
  0e0162c3
Jan 25, 2017
- Updated pipeline, added peak calling and other downstream analyses · 1c039453
  Christian Arnold authored 8 years ago
  
  1c039453
Dec 19, 2016
- Pipeline updates · 914b16f9
  Christian Arnold authored 8 years ago
  
  914b16f9
Dec 09, 2016
- Small update · 9c3b5107
  Christian Arnold authored 8 years ago
  
  9c3b5107
- Small update · 70f5017f
  Christian Arnold authored 8 years ago
  
  70f5017f
Nov 24, 2016
- Updated path to (new) Picard version and improved cluster.json to generalize · 2610ecff
  Christian Arnold authored 8 years ago
  
  2610ecff
Nov 22, 2016
- Added README, moved config.json.README to the doc folder · ef04b6e4
  Christian Arnold authored 8 years ago
  
  ef04b6e4
- Updated pipeline and example analysis · 6f30a5e4
  Christian Arnold authored 8 years ago
  
  6f30a5e4
Nov 11, 2016
- Further cleanup and restructuring · ece32ecb
  Christian Arnold authored 8 years ago
  
  ece32ecb
- Further cleanup and restructuring · 4d20b9d5
  Christian Arnold authored 8 years ago
  
  4d20b9d5
- Further cleanup and restructuring · fc3f0358
  Christian Arnold authored 8 years ago
  
  fc3f0358
- Updated Snakemake, added example folder, cleaned directory · 0b3631b0
  Christian Arnold authored 8 years ago
  
  0b3631b0
Oct 21, 2016
- init · ebcfa3aa
  Christian Arnold authored 8 years ago
  
  ebcfa3aa