Commits · e50bd6f3a3618e56dee4367c47ba1372776a7743 · Christian Arnold / ATACSeq_Snakemake

Feb 24, 2022
- Updated snakemake version to 6.4.0 due to workflow.source_path · e50bd6f3
  Christian Arnold authored 3 years ago
  
  e50bd6f3
Feb 23, 2022
- Small reorganization and removal of picard command line argument · 09d80332
  Christian Arnold authored 3 years ago
  
  09d80332
- Singularity changes · 19a85189
  Christian Arnold authored 3 years ago
  
  19a85189
Feb 22, 2022
- Cleanup · 81b32ed1
  Christian Arnold authored 3 years ago
  
  81b32ed1
- Major update, preparing new ATAC-Seq pipeline version · 57f635d7
  Christian Arnold authored 3 years ago
  
  57f635d7
Jan 11, 2022
- Dev: Intermediate updates · 1f5ab69c
  Christian Arnold authored 3 years ago
  
  1f5ab69c
Jan 10, 2022
- edited consensus peak script to exclude control samples · a5896961
  Rim Moussa authored 3 years ago
  
  a5896961
- chipseq changes · 1e28aa2d
  Rim Moussa authored 3 years ago
  
  1e28aa2d
Nov 30, 2021
- Bugfixes and additions for dev version · 68bd84f5
  Christian Arnold authored 3 years ago
  
  68bd84f5
Nov 25, 2021
- Changed repo structure and divided templates into dev and stable, few other small changes for dev · 84562a19
  Christian Arnold authored 3 years ago
  
  84562a19
Nov 22, 2021
- various small changes before merging Rim's update for dev · 76f89bed
  Christian Arnold authored 3 years ago
  
  76f89bed
Nov 19, 2021
- added SE mode, added ChIPseq data type, other minor changes · 26b15b7a
  Rim Moussa authored 3 years ago
  
  26b15b7a
May 27, 2021
- Updated templates and other minor changes · d11203cf
  Christian Arnold authored 3 years ago
  
  d11203cf
Aug 24, 2020
- General update · aa605743
  Christian Arnold authored 4 years ago
  
  aa605743
Aug 23, 2019
- Cleanup · d09c49de
  Christian Arnold authored 5 years ago
  
  d09c49de
- Various small changes · 119127d1
  Christian Arnold authored 5 years ago
  
  119127d1
May 31, 2019
- Many minor changes · bd9d91dd
  Christian Arnold authored 5 years ago
  
  bd9d91dd
Oct 09, 2018
- Adjusted bamCoverage rule for deepTools version >=3. For older deepTool... · 89435ec8
  Christian Arnold authored 6 years ago
  
  Adjusted bamCoverage rule for deepTools version >=3. For older deepTool versions, it will not work anymore.
  89435ec8
Oct 04, 2018
- cleanup · e4451260
  Christian Arnold authored 6 years ago
  
  e4451260
- Various updates and improvements · 0a4ef72a
  Christian Arnold authored 6 years ago
  
  0a4ef72a
Jun 27, 2018
- Updated Pipeline · 15f00315
  Christian Arnold authored 6 years ago
  
  15f00315
Jun 20, 2018
- Updated documentation and examples · a6dd8563
  Christian Arnold authored 6 years ago
  
  a6dd8563
Jun 12, 2018
- Bigger update, provided templates, updated code · a1e44da9
  Christian Arnold authored 6 years ago
  
  a1e44da9
Oct 25, 2017
- SLURM customization · bcb839cd
  Christian Arnold authored 7 years ago
  
  bcb839cd
- cleanup · fe2dd662
  Christian Arnold authored 7 years ago
  
  fe2dd662
- adjusted for SLURM · 2bb28c51
  Christian Arnold authored 7 years ago
  
  2bb28c51
Jun 14, 2017
- Updated respository, adding new working example, minor changes · 0e0162c3
  Christian Arnold authored 7 years ago
  
  0e0162c3
Jan 25, 2017
- Updated pipeline, added peak calling and other downstream analyses · 1c039453
  Christian Arnold authored 8 years ago
  
  1c039453
Dec 19, 2016
- Pipeline updates · 914b16f9
  Christian Arnold authored 8 years ago
  
  914b16f9
Dec 09, 2016
- Small update · 70f5017f
  Christian Arnold authored 8 years ago
  
  70f5017f
Nov 24, 2016
- Updated path to (new) Picard version and improved cluster.json to generalize · 2610ecff
  Christian Arnold authored 8 years ago
  
  2610ecff
Nov 22, 2016
- Added README, moved config.json.README to the doc folder · ef04b6e4
  Christian Arnold authored 8 years ago
  
  ef04b6e4
- Updated pipeline and example analysis · 6f30a5e4
  Christian Arnold authored 8 years ago
  
  6f30a5e4
Nov 11, 2016
- Further cleanup and restructuring · ece32ecb
  Christian Arnold authored 8 years ago
  
  ece32ecb
- Further cleanup and restructuring · 4d20b9d5
  Christian Arnold authored 8 years ago
  
  4d20b9d5
- Further cleanup and restructuring · fc3f0358
  Christian Arnold authored 8 years ago
  
  fc3f0358
- Updated Snakemake, added example folder, cleaned directory · 0b3631b0
  Christian Arnold authored 8 years ago
  
  0b3631b0
Oct 21, 2016
- init · ebcfa3aa
  Christian Arnold authored 8 years ago
  
  ebcfa3aa