Commits · master · Jean-Karim Heriche / Image Data Explorer

27 Jun, 2022 1 commit
- Remove unnecessary image normalization. · f66728dc
  Jean-Karim Heriche authored Jun 27, 2022
  
  f66728dc
25 Jun, 2022 1 commit
- Fix bug in scatterplot with group colours. · aa84a5d1
  Jean-Karim Heriche authored Jun 25, 2022
  
  aa84a5d1
22 Jun, 2022 1 commit
- Add jitter to reduce overplotting in scatterplot. · b47618c2
  Jean-Karim Heriche authored Jun 22, 2022
  
  b47618c2
12 May, 2022 1 commit
- Update R to 4.2.0 in Dockerfile. · a75ec955
  Jean-Karim Heriche authored May 12, 2022
  
  a75ec955
10 May, 2022 2 commits
- Show images when ROIs exist but coordinates are undefined/empty. Fix handling... · 6a16acfb
  Jean-Karim Heriche authored May 10, 2022
```
Show images when ROIs exist but coordinates are undefined/empty. Fix handling of unquoted NA in data table.
```
  6a16acfb
- Show images when ROIs exists but coordinates are undefined/empty. Fixed... · d169b2ac
  Jean-Karim Heriche authored May 10, 2022
```
Show images when ROIs exists but coordinates are undefined/empty. Fixed reading of unquoted NA in data table.
```
  d169b2ac
09 May, 2022 1 commit
- Read "NA" and "N/A" as NA (R missing value indicator) in quoted CSV files. · dd99add8
  Jean-Karim Heriche authored May 09, 2022
  
  dd99add8
06 May, 2022 1 commit

Handle NAs: · 8a4a6707

Jean-Karim Heriche authored May 06, 2022

  - remove NAs in heuristic to choose histogram bin width
  - remove ROIs with NA coordinates when clicking in image viewer.

8a4a6707

29 Mar, 2022 1 commit
- Fix bug in object selection in image when data is 3D. · bb38afde
  Jean-Karim Heriche authored Mar 29, 2022
  
  bb38afde
15 Feb, 2022 1 commit
- Export plots in svg. · d3e6dbd6
  Jean-Karim Heriche authored Feb 15, 2022
  
  d3e6dbd6
03 Feb, 2022 1 commit
- Don't use NA/not annotated as label for metric learning with UMAP. · 1a571264
  Jean-Karim Heriche authored Feb 03, 2022
  
  1a571264
13 Jan, 2022 1 commit
- Allow more than 24 groups for plotting, just don't colour them. Updated screenshot. · 121d4a9e
  Jean-Karim Heriche authored Jan 13, 2022
  
  121d4a9e
07 Jan, 2022 1 commit
- Added simple heuristic to determine binning for histogram plots. · 9f93cd99
  Jean-Karim Heriche authored Jan 07, 2022
  
  9f93cd99
04 Jan, 2022 1 commit
- Allow longer legends for plots. Fixed bug in plate viewer. · 7160289f
  Jean-Karim Heriche authored Jan 04, 2022
  
  7160289f
03 Jan, 2022 2 commits
- Remove legend title from plate view. · f6f2131c
  Jean-Karim Heriche authored Jan 03, 2022
  
  f6f2131c
- Remove legend title in scatter plot. · c0c9a3ec
  Jean-Karim Heriche authored Jan 03, 2022
  
  c0c9a3ec
17 Dec, 2021 2 commits
- Fixed bug preventing creation of annotation column. · 54e60891
  Jean-Karim Heriche authored Dec 17, 2021
  
  54e60891
- Adjusted well size. Fixed typo preventing clearing of image viewer 2. · bf0e1e0d
  Jean-Karim Heriche authored Dec 17, 2021
  
  bf0e1e0d
16 Dec, 2021 1 commit
- Allow incomplete plates and multiple data points per well. · 9ee9a538
  Jean-Karim Heriche authored Dec 16, 2021
  
  9ee9a538
12 Nov, 2021 1 commit
- Added links to wiki documentation. Created RStudio project. · 860ae29e
  Jean-Karim Heriche authored Nov 12, 2021
  
  860ae29e
11 Nov, 2021 2 commits
- Added box plot. · df27a978
  Jean-Karim Heriche authored Nov 11, 2021
  
  df27a978
- Added deployment to cbbcs-01 to CI pipeline. · c0989b43
  Jean-Karim Heriche authored Nov 11, 2021
  
  c0989b43
08 Nov, 2021 15 commits
- Added labels to Dockerfile. · 21e69fec
  Jean-Karim Heriche authored Nov 08, 2021
  
  21e69fec
- Updated README.md · 3eb1b052
  Jean-Karim Heriche authored Oct 06, 2021
  
  3eb1b052
- Allow up to 24 colours in histogram. · 8da7c809
  Jean-Karim Heriche authored Sep 13, 2021
  
  8da7c809
- Remove symlink (not working with runUrl()). · cc42a90b
  Jean-Karim Heriche authored Sep 13, 2021
  
  cc42a90b
- Remove dot in symlink. · f466fa62
  Jean-Karim Heriche authored Sep 13, 2021
  
  f466fa62
- Added app.R as symlink to image_data_explorer.R to allow running with shiny::runUrl(). · 72e69a8f
  Jean-Karim Heriche authored Sep 13, 2021
  
  72e69a8f
- Changed name of the registry mirror · 372ed106
  Jean-Karim Heriche authored Sep 06, 2021
  
  372ed106
- Added use of registry mirror · 7534f589
  Jean-Karim Heriche authored Sep 03, 2021
  
  7534f589
- Added missing package dbscan. · 618b840e
  Jean-Karim Heriche authored Jul 02, 2021
  
  618b840e
- Allow up to 24 group colours. · 6438942f
  Jean-Karim Heriche authored Jun 15, 2021
  
  6438942f
- Changed default rv$selectedFrame to 1 instead of NULL to work with single frame images. · 8048d4ae
  Jean-Karim Heriche authored Jun 02, 2021
  
  8048d4ae
- Increased file upload limit to 1 GB. · 6f177676
  Jean-Karim Heriche authored May 26, 2021
  
  6f177676
- Use R 4.1.0 · 61d0e094
  Jean-Karim Heriche authored May 21, 2021
  
  61d0e094
- Changed LICENSE to GPLv3 because the image viewer is derived from EBImage code released under LGPL · 58914857
  Jean-Karim Heriche authored May 20, 2021
  
  58914857
- Filled License field with LGPL · 9d89466a
  Jean-Karim Heriche authored May 20, 2021
  
  9d89466a
20 May, 2021 2 commits
- Uploaded modified .gitignore · 281ba92c
  Jean-Karim Heriche authored May 20, 2021
  
  281ba92c
- Updated .gitignore. Removed test_data rds files. · 639c5c3d
  Jean-Karim Heriche authored May 20, 2021
  
  639c5c3d
18 May, 2021 1 commit
- Added semi-supervised option to UMAP. Increased timeout for S3 bucket connection. · f1c2d87c
  Jean-Karim Heriche authored May 18, 2021
  
  f1c2d87c